Peer reviewed papers

(Supervised students were underlined)

1. Kunimatsu S, Kurota H, Muko S, Ohshimo S, Tomiyama T (2025) Predicting unseen chub mackerel densities through spatiotemporal machine learning: Indications of potential hyperdepletion in catch-per-unit-effort due to fishing ground contraction.  Ecological Informatics 85: 102944 (Open access) 
2. Islam T, Macario AC, Yoshida Y, Takahashi S, Sakurai G, Tomiyama T (2024) Effects of constant and variable salinity regimes on the occurrence, feeding, and growth of two juvenile flatfishes (Pseudopleuronectes yokohamae and Platichthys bicoloratus).  Estuarine, Coastal and Shelf Science 305: 108872. (Abstract) (Repository)
   
3. Kunimatsu S, Ohshimo S, Muko S, Kurota H, Tomiyama T (2023) Spatiotemporal variation in the size structure of the chub mackerel, Scomber japonicus, over half a century in the East Asian Marginal Seas.  Regional Studies in Marine Science 68: 103263. (Abstract)
   
4. Uehara S, Fujinami Y, Yamada T, Tomiyama T (2023) Validation of otolith daily ring deposition and hatch date estimations in larval and juvenile Japanese flounder Paralichthys olivaceus.  Fisheries Research 266: 106791. (Abstract)
5. Hashida D, Tomiyama T (2023) Hatch date and early growth of juvenile Japanese jack mackerel Trachurus japonicus caught in the Uwa Sea.  Journal of Fish Biology 103: 603-611. (Abstract)
   
6. Kudoh T, Midooka A, Aida S, Tomiyama T (2023) Interspecific differences in the vertical distribution patterns between Sebastes inermis and Sebastes ventricosus.  Fishery Bulletin 121: 73-77 (Abstract) (PDF)
7. Shoji J, Tomiyama T (2023) Influence of vegetation coverage on dissolved oxygen concentration in seagrass bed in the Seto Inland Sea: possible effects on fish nursery function.  Estuaries and Coasts 46: 1098-1109  (Abstract) (PDF)
   
8. Deguchi W, Fujita T, Yoneda M, Kono N, Yamamoto M, Harada K, Shoji J, Tomiyama T (2023) Potential impact of predation by larval Spanish mackerel on larval anchovy in the central Seto Inland Sea, Japan.  Deep-Sea Research II 208: 105272 (Abstract) (Repository)
   
9. Namikawa Y et al. (2022) Estimation of hatching date and early growth of larval and juvenile Ayu Plecoglossus altivelis altivelis in the coastal water off Tottori Prefecture on the basis of otolith micro-increments analysis.  Aquaculture Science 70: 343-352 (in Japanese with English abstract) 
10. Okamoto T, Sasaki K, Tomiyama T (2022) Morphological characteristics in the lateral line scales of the cutlassfish Trichiurus japonicus and comparisons of other scomboroids.  Ichthy, Natural History of Fishes of Japan 27: 11-14 (in Japanese with English abstract) (Open access)
11. Kinoshita K, Tomiyama T (2022) Starvation tolerance of early stage Laguncula pulchella  (Naticidae).  Journal of Shellfish Research 41: 355-359 (Abstract) (PDF) (Repository)
12. Yoshida K, Setogawa T, Sato T, Yamada M, Sato T, Narita K, Matsumoto A, Tomiyama T (2022)  Male-biased sex ratio in the crawling individuals of an invasive naticid snail during summer: implications for population management.  Scientific Reports 12: 7911 (Open access) (Repository)
    
13. Shoji J, Yoshikawa K, Tomiyama T, Kawamura T (2021) Temporal changes of the fish community in seagrass beds in Funakoshi and Otsuchi bays after habitat destruction caused by a tsunami in 2011.  Fisheries Science 87: 827-836 (Abstract) (PDF) 
    
14. Yoshida Y, Tomiyama T (2021) Habitat utilization and secondary production of the sharp-nosed sand goby Favonigobius gymnauchen around intertidal areas.  Environmental Biology of Fishes 104: 811-823 (Abstract) (PDF) (Repository)
    
15. Tomiyama T (2021) Ecophenotypic plasticity in shell growth direction of asari clam Ruditapes philippinarum.  Journal of the Marine Biological Association of the United Kingdom 101: 555-560 (Abstract) (Shared PDF)
    
16. Harada K, Morita T, Deguchi W, Yamamoto M, Fujita T, Tomiyama T (2021) High-temperature and starvation tolerances of juvenile Japanese Spanish mackerel Scomberomorus niphonius.  Fisheries Science 87: 513-519 (Abstract) (PDF) (Repository)
    
17. Fujita T, Yamamoto M, Kono N, Tomiyama T, Sugimatsu K, Yoneda M (2021) Temporal variations in hatch date and early survival of Japanese anchovy (Engraulis japonicus) in response to environmental factors in the central Seto Inland Sea, Japan.  Fisheries Oceanography 30: 527-541 (Open access) 
    
18. Tomiyama T, Sato T (2021) Effects of translocation on the asari clam Ruditapes philippinarum at small spatial scales in Matsukawaura, Japan.  Bulletin of Marine Science 97: 647-664 (Open access)
19. Sakurai G, Takahashi S, Yoshida Y, Yoshida H, Shoji J, Tomiyama T (2021) Importance of experienced thermal history: effect of acclimation temperatures on the high-temperature tolerance and growth performance of juvenile marbled flounder.  Journal of Thermal Biology 97: 102831 (Abstract) (Repository)  
    
20. Yamamoto M, Ito A, Yamazaki H, Kanematsu M, Tomiyama T (2021) Factors affecting the survival and growth of pen shell spats in suspended intermediate culture. Aquaculture Science 69: 123-129 (in Japanese with English abstract)
    
21. Kurita Y, Sakuma T, Kakehi S, Shimamura S, Sanematsu A, Kitagawa H, Ito S, Kawabe R, Shibata Y, Tomiyama T (2021) Seasonal changes in depth and temperature of habitat for Japanese flounder Paralichthys olivaceus on the Pacific coast of northeastern Japan.  Fisheries Science 87: 223-237 (Abstract) (PDF)
22. Tomiyama T, Yamada M, Yamanobe A, Kurita Y (2021) Seasonal bathymetric distributions of three coastal flatfishes: estimation from logbook data for trawl and gillnet fisheries.  Fisheries Research 233: 105733 (Abstract) (Repository)
23. Yamada T, Maehara T, Watanabe A, Takashima K, Tomiyama T (2020) Annual variation in the prey utilization of juvenile Japanese flounder in southwestern Hiuchi-Nada, Seto Inland Sea, Japan.  Regional Studies in Marine Science 39: 101453 (Abstract)
24. Yamamoto M, Tomiyama T, Shoji J (2020) Impact of warming on the physiological condition of ridged-eye flounder Pleuronichthys lighti during the summer in the central Seto Inland Sea, Japan.  Regional Environmental Change 20: 76 (Abstract) (PDF)
25. Goto N, Hashida D, Nakao H, Tomiyama T (2020) Spatiotemporal distribution of two mackerel species (Scomber japonicus and Scomber australasicus) in the Bungo Channel, western Japan.  Nippon Suisan Gakkaishi 86: 295-301 (in Japanese with English abstract) (Repository)
26. Yoshida Y, Uehara D, Shoji J, Tomiyama T (2019) Fish fauna off sandy beaches, in and estuary, and in a seagrass bed in Hiroshima Bay, Seto Inland Sea.  Journal of Fisheries Technology 12: 31-37 (in Japanese with English abstract) (Repository)
27. Yoshikawa K, Tomiyama T, Shoji J (2019) Temporal changes of the fish community in a seagrass bed after disappearance of vegetation caused by disturbance of the sea bottom and sediment deposition.   Journal of the Marine Biological Association of the United Kingdom 99: 1857-1864 (Abstract) (Repository)
28. Yoshida K, Setogawa T, Tomiyama T (2019) Distribution and body size changes of the moonsnail Laguncula pulchella in tidal flats in Hiroshima, Japan.  Aquatic Animals 2019: AA2019-6 (in Japanese with English abstract) (Repository)
    
29. Mazumder SK, Ghaffar MA, Tomiyama T, Das SL (2019) Effects of acclimation temperatures on the respiration physiology and thermal coefficient of Malabar blood snapper.  Respiratory Physiology & Neurobiology 268: 103253 (Abstract)
    
30. Endo A, Iwasaki N, Shibata J, Tomiyama T, Sakai Y (2019) The burrowing sand lance Ammodytes japonicus (Teleostei, Ammodytidae) prefers benthic sediments of low shear strength.  Journal of Ethology 37: 213-219 (Abstract) (PDF)
    
31. Kuzuhara H, Yoneda M, Tsuzaki T, Takahashi M, Kono N, Tomiyama T (2019) Food availability before aestivation governs growth and the winter reproductive potential in the capital breeding fish, Ammodytes japonicus.  PLOS ONE 14: e0213611 (Open access) (Repository)
    
32. Hashida D, Matsumoto N, Tomiyama T (2019) Annual reproductive cycle and spawning ground formation in Japanese jack mackerel Trachurus japonicus in the Uwa Sea, Japan.  Fisheries Science 85: 303-315 (Abstract) (PDF)
33. Uehara D, Shoji J, Ochi Y, Yamaguchi S, Nakaguchi K, Shibata J, Tomiyama T (2019) Diel changes in the vertical distribution of larval cutlassfish Trichiurus japonicus.  Journal of the Marine Biological Association of the United Kingdom 99: 517-523 (Abstract) (Repository) (Shared PDF)
    
34. Shibata J, Tomano S, Umino T, Tomiyama T, Sakai Y, Nakai S, Okuda T, Nishijima W (2018) Isolation, characterization and PCR multiplexing of microsatellite loci for western sand lance (Ammodytes japonicus Duncker and Mohr 1939).  Japan Agricultural Research Quarterly 52: 307-313 (Abstract) (PDF)
    
35. Tomiyama T, Kusakabe K, Otsuki N, Takahashi S, Yoshida Y, Hata M, Shoji J, Hori M (2018) Ontogenetic changes in the optimal temperature for growth of juvenile marbled flounder Pseudopleuronectes yokohamae.  Journal of Sea Research 141: 14-20 (Abstract) (Repository)
36. Takahashi S, Kurita Y, Togashi H, Tomiyama T (2018) Diel feeding rhythms, daily ration, and seasonal changes thereof in marbled flounder Pseudopleuronectes yokohamae.  Journal of Applied Ichthyology 34: 888-895 (Abstract) (Repository)
37. Tomiyama T (2018) Lethal and non-lethal effects of an invasive naticid gastropod on the production of a native clam.  Biological Invasions 20: 2005-2014 (Abstract) (PDF)
38. Okamoto N, Maung-Saw-Htoo-Thaw, Sein-Thaung, Koike K, Shibata J, Tomiyama T (2018) Species composition of hairtails (Trichiuridae) in Myanmar.  Regional Studies in Marine Science 17: 73-77 (Abstract) (Repository)
39. Yamada K, Miyazaki K, Tomiyama T, Kanaya G, Miyama Y, Yoshinaga T, Wakui K, Tamaoki M, Toba M (2018) Impact of sea spider parasitism on host clams: susceptibility and intensity-dependent mortality.  Journal of the Marine Biological Association of the United Kingdom 98: 735-742 (Abstract)
40. Hashida D, Takechi A, Tomiyama T (2017) Relationship between recruitment of the juvenile jack mackerel (Trachurus japonicus) and the warm water inflow in the Uwa Sea.  Bulletin of the Japanese Society of Fisheries Oceanography 81: 97-109 (in Japanese with English abstract) (PDF)
41. Shigematsu Y, Ochi Y, Yamaguchi S, Nakaguchi K, Sakai Y, Shibata J, Nishijima W, Tomiyama T (2017) Winter longitudinal variation in the body size of larval fishes in the Seto Inland Sea, Japan.  Fisheries Science 83: 373-382 (Abstract) (PDF) (Repository)
42. Kusakabe K, Hata M, Shoji J, Hori M, Tomiyama T (2017) Effects of water temperature on feeding and growth of juvenile marbled flounder Pseudopleuronectes yokohamae under laboratory conditions: evaluation by group- and individual-based methods.  Fisheries Science 83: 215-219 (Abstract) (PDF) (Repository)
43. Yoshida K, Sato T, Narita K, Tomiyama T (2017) Abundance and body size of the moonsnail Laguncula pulchella in the Misuji River estuary, Seto Inland Sea, Japan: comparison with a population in northern Japan.  Plankton and Benthos Research 12: 53-60 (Abstract) (PDF)
44. Takasaki K, Tomiyama T (2017) Geographic variation in the size-related terminal-molt proportion and carapace width of the male snow crab Chionoecetes opilio off the Pacific coast of southern Tohoku, Japan.  Nippon Suisan Gakkaishi 83: 156-162 (in Japanese with English abstract) (PDF)
45. Niino Y, Shibata J, Tomiyama T, Sakai Y, Hashimoto H (2017) Feeding habits of the cutlassfish Trichiurus japonicus around Hiuchi-Nada, the central Seto Inland Sea, Japan.  Nippon Suisan Gakkaishi 83: 34-40 (in Japanese with English abstract) (PDF)
46. Abe H, Sato T, Iwasaki T, Wada T, Tomiyama T, Sato T, Hamaguchi M, Kajihara N, Kamiyama T (2017) Impact of the 2011 tsunami on the Manila clam Ruditapes philippinarum population and subsequent population recovery in Matsukawa-ura Lagoon, Fukushima, northeastern Japan.  Regional Studies in Marine Science 9: 97-105 (Abstract)
47. Shibata Y, Sakuma T, Wada T, Kurita Y, Tomiyama T, Yamada M, Iwasaki T, Mizuno T, Yamanobe A (2017) Effect of decreased fishing effort off Fukushima on abundance of Japanese flounder (Paralichthys olivaceus) using an age-structured population model incorporating seasonal coastal-offshore migrations.  Fisheries Oceanography 26: 193-207 (Open access) (PDF)
48. Kurita Y, Uehara S, Okazaki Y, Sakami T, Nambu R, Tomiyama T (2017) Impact of the great tsunami in 2011 on the quality of nursery grounds for juvenile Japanese flounder Paralichthys olivaceus in Sendai Bay, Japan.  Fisheries Oceanography 26: 165-180 (Abstract)
49. Tomiyama T, Kurita Y, Uehara S, Yamashita Y (2017) Inter-annual variation in the surplus prey production for stocking of Japanese flounder Paralichthys olivaceus.  Fisheries Research 186: 579-585 (Abstract)
50. Yamashita Y, Kurita Y, Yamada H, Miller JM, Tomiyama T (2017) A simulation model for estimating optimum stocking density of cultured juvenile flounder Paralichthys olivaceus in relation to prey productivity.  Fisheries Research 186: 572-578 (Abstract)
51. Masui T, Tomiyama T, Hashimoto H (2016) Age, growth, and reproductive characteristics of a clupeoid fish Ilisha elongata in the Seto Inland Sea.  Bulletin of the Japanese Society of Fisheries Oceanography 80: 129-135 (in Japanese with English abstract) (PDF)
52. Hata M, Sugimoto R, Hori M, Tomiyama T, Shoji J (2016) Occurrence, distribution and prey items of juvenile marbled sole Pseudopleuronectes yokohamae around a submarine groundwater seepage on a tidal flat in southwestern Japan.  Journal of Sea Research 111: 47-53 (Abstract)
53. Tomiyama T (2016) Quantitative regeneration in bivalve siphons: difference between short- and long-siphoned species.  Marine Biology 163: 80 (Abstract) (PDF)
54. Tomiyama T, Yamada K, Wakui K, Tamaoki M, Miyazaki K (2016) Impact of sea spider parasitism on host clams: relationships between burial patterns and parasite loads, somatic condition and survival of host.  Hydrobiologia 770: 15-26 (Abstract) (PDF)
55. Tomiyama T, Katayama S, Yamamoto M, Shoji J (2016) Diel feeding patterns and daily food intake of juvenile stone flounder Platichthys bicoloratus.  Journal of Sea Research 107 Part 1: 130-137 (Abstract)
56. Hata M, Otsuki N, Tanaka H, Tomiyama T, Shoji J (2015) Collection record of spotted halibut Verasper variegatus juveniles from the central Seto Inland Sea, Japan.  Aquaculture Science 63: 199-201 (Abstract) (PDF)
57. Miyazaki K, Tomiyama T, Yamada K, Tamaoki M (2015) 18S analysis of the taxonomic position of an endoparasitic pycnogonid, Nymphonella tapetis (Arthropoda: Pycnogonida: Ascorhynchidae).  Journal of Crustacean Biology 35: 491-494 (Abstract)
58. Tomiyama T (2013) Sexual dimorphism in scales of marbled flounder Pseudopleuronectes yokohamae (Pleuronectiformes: Pleuronectidae), with comments on the relevance to their spawning behaviour.  Journal of Fish Biology 83: 1334-1343 (Abstract)
59. Tomiyama T (2013) Timing and frequency of egg-collar production of the moonsnail Euspira fortunei.  Fisheries Science 79: 905-910 (Abstract) (PDF)
60. Tomiyama T, Yamada M, Yoshida T (2013) Seasonal migration of the snailfish Liparis tanakae and their habitat overlap with 0-year-old Japanese flounder Paralichthys olivaceus.  Journal of the Marine Biological Association of the United Kingdom 93: 1981-1987 (Abstract) (Shared PDF)  Erratum: J Mar Biol Assoc UK 93: 1989 (Link)
61. Tomiyama T, Uehara S, Kurita Y (2013) Feeding relationships among fishes in shallow sandy areas in relation to stocking of Japanese flounder.  Marine Ecology Progress Series 479: 163-175 (Abstract)
62. Tomiyama T (2012) Seasonal and ontogenetic diet shift in juvenile stone flounder Platichthys bicoloratus.  Journal of Fish Biology 81: 1430-1435 (Abstract)
63. Chow S, Niwa K, Okamoto S, Murauchi Y, Hirai R, Hibino M, Wakui K, Tomiyama T, Kobayashi Y, Toba M, Kano Y (2012) Genetic diversity in three local populations of the parasitic sea spider Nymphonella tapetis and taxonomic position of the species.  Nippon Suisan Gakkaishi 78: 895-902 (in Japanese with English abstract) (PDF)
64. Tomiyama T, Suzuki T, Sato T, Kato Y, Kameiwa S, Sugibayashi N, Okoshi K (2011) Unintentional introduction and the distribution of the nonindigenous moonsnail Euspira fortunei in Matsukawaura Lagoon, Japan.  Nippon Suisan Gakkaishi 77: 1020-1026 (in Japanese with English abstract) (PDF)
65. Tomiyama T, Watanabe M, Kawata G, Ebe K (2011) Post-release feeding and growth of hatchery-reared Japanese flounder Paralichthys olivaceus: relevance to stocking effectiveness.  Journal of Fish Biology 78: 1423-1436 (Abstract)
66. Tomiyama T, Kurita Y (2011) Seasonal and spatial variations in prey utilization and condition of a piscivorous flatfish Paralichthys olivaceus.  Aquatic Biology 11: 279-288 (Abstract) (PDF)
67. Oshima M, Robert D, Kurita Y, Yoneda M, Tominaga O, Tomiyama T, Yamashita Y, Uehara S (2010) Do early growth dynamics explain recruitment success in Japanese flounder Paralichthys olivaceus off the Pacific coast of northern Japan?  Journal of Sea Research 64: 94-101 (Abstract)
68. Tomiyama T, Komizunai N, Ito K, Omori M (2010) Spatial variation in the abundance and condition of the bivalve Nuttallia olivacea in relation to environmental factors and sublethal predation.  Marine Ecology Progress Series 406: 185-196 (Abstract) (PDF)
69. Tomiyama T, Yamashita Y, Tanaka M (2009) Occurrence of juvenile Japanese flounder Paralichthys olivaceus in brackish estuaries.  Estuarine, Coastal and Shelf Science 85: 661-665 (Abstract)
70. Tomiyama T, Ebe K, Kawata G, Fujii T (2009) Post-release predation on hatchery-reared Japanese flounder Paralichthys olivaceus in the coast of Fukushima, Japan.  Journal of Fish Biology 75: 2629-2641 (Abstract)  Erratum: J Fish Biol 76: 1064-1065 (Link)
71. Tomiyama T, Watanabe M, Kurita Y (2009) Rapid fluctuation in infection levels of Neoheterobothrium hirame in Japanese flounder Paralichthys olivaceus in the Joban area, Japan.  Journal of Fish Biology 75: 172-185 (Abstract)
72. Tomiyama T, Komizunai N, Shirase T, Ito K, Omori M (2008) Spatial intertidal distribution of bivalves and polychaetes in relation to environmental conditions in the Natori River estuary, Japan.  Estuarine, Coastal and Shelf Science 80: 243-250 (Abstract)
73. Tomiyama T, Omori M (2008) Habitat selection of stone and starry flounders in an estuary in relation to feeding and survival.  Estuarine, Coastal and Shelf Science 79: 475-482 (Abstract)
74. Tomiyama T, Mizuno T, Watanabe M, Fujita T, Kawata G (2008) Patterns and frequency of hypermelanosis on the blind side in wild Japanese flounder.  Nippon Suisan Gakkaishi 74: 171-176 (in Japanese with English abstract) (PDF)
75. Tomiyama T, Mizuno T, Uenoyama D, Enomoto M, Sohtome T (2008) Offshore collection of larval Japanese flounder Paralichthys olivaceus: implication for transport-induced mortality.  Fisheries Science 74: 449-451 (Abstract)
76. Tomiyama T, Watanabe M, Fujita T (2008) Community-based stock enhancement and fisheries management of the Japanese flounder in Fukushima, Japan.  Reviews in Fisheries Science 16: 146-153 (Abstract) (PDF)
77. Yoneda M, Kurita Y, Kitagawa D, Ito M, Tomiyama T, Goto T, Takahashi K (2007) Age validation and growth variability of Japanese flounder Paralichthys olivaceus off the Pacific coast of northern Japan.  Fisheries Science 73: 585-592 (Abstract)
78. Tomiyama T, Omori M, Minami T (2007) Feeding and growth of juvenile stone flounder in estuaries: generality and the importance of sublethal tissue cropping of benthic invertebrates.  Marine Biology 151: 365-376 (Abstract) (PDF)
79. Tomiyama T, Omori M (2007) Interactive effects of sublethal predation and body size on siphon production of the bivalve Nuttallia olivacea.  Journal of Experimental Marine Biology and Ecology 341: 102-109 (Abstract)
80. Tomiyama T, Ito K (2006) Regeneration of lost siphon tissues in the tellinacean bivalve Nuttallia olivacea.  Journal of Experimental Marine Biology and Ecology 335: 104-113 (Abstract)
81. Tomiyama T, Katayama S, Omori M, Honda H (2005) Importance of feeding on regenerable parts of prey for juvenile stone flounder Platichthys bicoloratus in estuarine habitats.  Journal of Sea Research 53: 297-308 (Abstract)
82. Tomiyama T, Watanabe M, Ebe K (2004) Infection dynamics of Neoheterobothrium hirame in Japanese flounder in the Joban Sea, eastern Japan.  Fish Pathology 39: 197-202 (Abstract) (PDF)
83. Tomiyama T, Sasaki K, Omori M (2004) Predator-prey size relationship in siphon cropping between the juvenile stone flounder Platichthys bicoloratus and the bivalve Nuttallia olivacea.  Fisheries Science 70: 531-536 (Abstract) (PDF)
84. Sasaki K, Kudo M, Tomiyama T, Ito K, Omori M (2002) Predation pressure on the siphons of the bivalve Nuttallia olivacea by the juvenile stone flounder Platichthys bicoloratus in the Natori River estuary.  Fisheries Science 68: 104-116 (Abstract) (PDF)